Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs1891935 chr1:3694795 C/T 0.000161 176 24.7 36.73 2.3 KM Plot
PCPG rs189327630 chr9:86486002 T/A 0.000126 175 26.57 24.7 14.47 KM Plot
PCPG rs190514460 chr7:158651529 C/T 0 176 25.53 19.83 3.17 KM Plot
PCPG rs190638559 chr7:1110505 C/T 0.000278 172 25.53 25.4 49.58 KM Plot
PCPG rs1913635 chr3:80557195 T/C 2.79E-5 177 19.53 24.77 27.2 KM Plot
PCPG rs1914055 chr3:80581780 C/A 7.21E-5 175 19.53 24.77 27.2 KM Plot
PCPG rs1914056 chr3:80581756 A/G 7.16E-5 175 19.53 24.77 27.2 KM Plot
PCPG rs191665329 chr7:105160767 G/A 5.56E-5 177 20.17 29.43 2.28 KM Plot
PCPG rs192026667 chr12:56724333 C/T 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs192353706 chr7:158676826 C/G 0 177 25.53 20.37 3.17 KM Plot
PCPG rs1924419 chr13:37530823 A/G 0.00032 176 4.17 24.47 25.87 KM Plot
PCPG rs1924420 chr13:37530840 A/T 0.000348 174 4.17 24.47 25.87 KM Plot
PCPG rs1924422 chr13:37540214 G/A 0.000337 176 4.17 24.17 25.87 KM Plot
PCPG rs1924426 chr13:37609725 C/T 0.000308 178 4.17 24.23 25.92 KM Plot
PCPG rs1951898 chr13:37506819 A/G 0.000434 175 6.37 24.7 25.53 KM Plot